| Immune and hematopoietic |
| Bone marrow mononuclear cells (MNC) |
Yorkshire miniswine |
https://doi.org/10.1111/j.1540-8191.2010.01086.x |
| CAR T cells |
Human |
https://doi.org/10.1038/s41586-025-09507-9 |
| CD3+ T |
Human |
https://doi.org/10.1007/s00262-012-1375-5 |
| CD34+ hematopoietic stem cells |
Human |
https://doi.org/10.1016/j.omtm.2017.11.008 |
| CD4 T cells |
Human |
https://doi.org/10.1016/j.immuni.2024.11.004 |
| CD8+ T |
Human |
https://doi.org/10.1038/s41586-024-07300-8 |
Hematopoietic progenitor cells (HPCs) |
Human |
https://doi.org/10.1186/s13024-018-0297-x |
| Jurkat |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| Leukocytes |
Human |
https://doi.org/10.3390/cells10040843 |
| Lung interstitial cells (Mø) |
Mouse |
https://doi.org/10.3390/biomedicines9091241 |
| Lymphoblast cell line (LCLs) |
Human |
https://doi.org/10.1371/journal.pone.0174317 |
| Macrophage cell line RAW 264.7 |
Mouse |
https://doi.org/10.1093/jac/dks056 |
| Naive CD4+ T cells |
Human |
https://doi.org/10.1093/cei/uxab012 |
| Naive CD8+ T cells |
Human |
https://doi.org/10.1093/cei/uxab012 |
| Peripheral blood mononuclear cells (PBMCs) |
Human |
https://doi.org/10.3892/ol.2023.13967 |
| Spleen cells |
Human |
https://doi.org/10.1016/j.cell.2019.09.035 |
| Splenocytes |
Mouse |
https://doi.org/10.1016/j.cell.2019.09.035 |
| Tonsillar cells |
Human |
https://doi.org/10.1093/ndt/gfr403 |
| Type-2 conventional dendritic cells (cDC2s) |
Human |
https://doi.org/10.1016/j.cell.2019.09.035 |
| U-937 |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| Uterine tissue-resident macrophages (Mø) |
Mouse |
https://doi.org/10.3390/biomedicines11030985 |
| Stem, progenitor, and differentiated derivatives |
| Adipose-derived stem cells (ASCs) |
Human |
https://doi.org/10.1038/nprot.2010.199 |
| Airway basal stem cell (ABSC) |
Human |
https://doi.org/10.1186/s12931-025-03302-w |
| Bone marrow-derived endothelial progenitor cells (EPCs) |
Yorkshire miniswine |
https://doi.org/10.1016/j.athoracsur.2007.12.006 |
| Bone marrow-derived mesenchymal stem cells (BM-MSCs) |
Horse |
https://doi.org/10.1186/scrt483 |
| Embryonic stem cells (ESCs) |
Human |
https://doi.org/10.1016/j.stemcr.2023.01.007 |
| Gingiva-derived mesenchymal stem cells (GMSCs) |
Human |
https://doi.org/10.3390/bioengineering5010008 |
| Hepatoblast-like cells (HBCs) |
Human |
https://doi.org/10.1002/hep4.1111 |
| hiPSC-derived cardiomyocytes |
Human |
https://doi.org/10.1152/physiolgenomics.00021.2020 |
| hiPSC-derived microglia progenitors MG01 |
Human |
https://doi.org/10.3390/s41467-024-52400-8 |
| iPSC-derived motor neurons |
Human |
https://doi.org/10.1016/j.nbd.2024.106673 |
| Induced pluripotent stem cells (iPSCs) |
Human |
https://doi.org/10.1016/j.xpro.2023.102073 |
| Induced pluripotent stem cells (iPSCs) |
Mouse |
https://doi.org/10.1247/csf.11008 |
| iPSC-derived neural progenitor cells (NPCs) |
Human |
https://doi.org/10.21769/bioprotoc.3939 |
| Mesenchymal stem cells (MSCs) |
Human |
https://doi.org/10.1371/journal.pone.0282473 |
| Neural stem cells (NSCs) |
Human |
https://doi.org/10.1186/s12987-023-00471-y |
| Epithelial cells |
| Bronchial epithelial cells (BECs) |
Human |
https://doi.org/10.1371/journal.pone.0306197 |
| Chinese hamster ovary cells (CHO-K1) |
Chinese hamster |
https://doi.org/10.3389/fphar.2019.00851 |
| Large airway epithelial (LAE) cells |
Human |
https://doi.org/10.1016/j.celrep.2024.114076 |
| MCF10A |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| MCF10AT1 |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| Medullary thymic epithelial cells |
Mouse |
https://doi.org/10.1084/jem.20240817 |
| Nasal epithelial cells (HNECs) |
Human |
https://doi.org/10.1371/journal.pone.0306197 |
| RPE1 (retinal pigment epithelial) |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| RWPE-1 |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| Small airway epithelial (SAE) cells |
Human |
https://doi.org/10.1016/j.celrep.2024.114076 |
| Uterine epithelial cells (pbUEC) |
Bovine |
https://doi.org/10.1111/j.1439-0531.2011.01792.x |
| Fibroblasts & stromal |
| Dermal fibroblast BJ cells |
Human |
https://doi.org/10.1016/j.isci.2024.109708 |
| Dermal fibroblast HFF-1 cells |
Human |
https://doi.org/10.1016/j.isci.2024.109708 |
| Embryonic fibroblasts |
Canine |
https://doi.org/10.1016/j.theriogenology.2005.12.015 |
| Embryonic fibroblasts |
Mouse |
https://doi.org/10.1016/j.theriogenology.2005.12.015 |
| Fibroblasts |
Porcine |
https://doi.org/10.1111/j.1399-3089.2006.00365.x |
| Gastric cancer-associated fibroblasts (CAFs) |
Human |
https://doi.org/10.1016/j.xpro.2021.100553 |
| Lung fibroblasts |
Human |
https://doi.org/10.1002/adfm.202515610 |
| Oral fibroblasts |
Human |
https://doi.org/10.1016/j.bbrep.2021.101169 |
| Periodontal ligament fibroblasts (PDLFs) |
Human |
https://doi.org/10.1002/cre2.533 |
| Stromal cells of brain |
Mouse |
https://doi.org/10.1186/s12865-019-0314-z |
| Stromal cells of liver |
Mouse |
https://doi.org/10.1186/s12865-019-0314-z |
| Stromal cells of lung |
Mouse |
https://doi.org/10.1186/s12865-019-0314-z |
| Stromal cells of spleen |
Mouse |
https://doi.org/10.1186/s12865-019-0314-z |
| Stromal vascular fraction (SVF) |
Human |
https://doi.org/10.1002/jbm.a.37430 |
| Cancer |
| Adenocarcinomic human alveolar basal epithelial cells A549 |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| Colon cancer cell line DLD1 |
Human |
https://doi.org/10.1016/j.ymeth.2019.04.010 |
| Colon cancer cell line HCT116 |
Human |
https://doi.org/10.1016/j.ymeth.2019.04.010 |
| Gastric tumor cells |
Human |
https://doi.org/10.1038/s41467-024-52615-9 |
| HCC4006 |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| HeLa |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| HEK293T cells |
Human |
https://doi.org/10.1016/j.cmet.2021.11.001 |
| KGN cell line |
Human |
https://doi.org/10.1158/0008-5472.can-24-2341 |
| Liver cancer cell line HepG2 |
Human |
https://doi.org/10.18433/J3VK5G |
| LNCAP |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| MCF7 |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| MDA-MB-231 |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| MDA-MB-468 |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| NCI-H1048 |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| NCI-H1299 |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| NCI-H358 cells |
Human |
https://doi.org/10.1016/j.xcrm.2025.102317 |
| NCI-H446 |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| NCI-H526 |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| NCI-H69 |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| NCI-H82 |
Human |
https://doi.org/10.1038/s41586-025-09433-w |
| Ovarian cancer cells SKOV-3 |
Human |
https://doi.org/10.3389/fphar.2019.00851 |
| PC3 Chung |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| PC3 Guise |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| T47D |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| U-2 OS |
Human |
https://doi.org/10.1007/s00418-025-02368-3 |
| Patient-derived samples |
| Ascites-derived HGSC patient-derived xenograft |
Human |
https://doi.org/10.1186/s13046-022-02570-4 |
| Breast cancer tissue biopsies |
Human |
https://doi.org/10.1038/s42003-022-04025-0 |
| Gastric cancer biopsies |
Human |
https://doi.org/10.1038/s41598-022-12610-w |
| Glioma tissue cells |
Human |
https://doi.org/10.1038/s41467-025-58452-8 |
| Medulloblastoma tumor tissue |
Human |
https://doi.org/10.1038/s41467-025-56268-0 |
| Ovarian cancer models (OCMs) |
Human |
https://doi.org/10.1186/s13073-021-00952-5 |
| Ovarian metastatic cells |
Human |
https://doi.org/10.1038/s41467-024-52615-9 |
| Ovarian single cells |
Human |
https://doi.org/10.1038/s41467-019-11036-9 |
| Pancreatic ductal adenocarcinoma cells |
Human |
https://doi.org/10.1016/j.celrep.2019.01.048 |
| Peritoneal metastases cells |
Human |
https://doi.org/10.1038/s41467-024-52615-9 |
| Tumor breast biopsies |
Human |
https://doi.org/10.1016/j.xpro.2022.101712 |
| Tumor colorectal biopsies |
Human |
https://doi.org/10.1016/j.xpro.2022.101712 |
| Tumor gastric biopsies |
Human |
https://doi.org/10.1016/j.xpro.2022.101712 |
| Tumor pancreatic biopsies |
Human |
https://doi.org/10.1016/j.xpro.2022.101712 |
| Organoids and spheroids |
| Neurospheres glioblastoma stem-like cells (GSCs) |
Human |
https://doi.org/10.62347/grsp1268 |
| Prostate organoid |
Human |
https://doi.org/10.1038/s41467-021-26901-9 |
| Intestinal tumor-derived organoids |
Mouse |
https://doi.org/10.1007/978-1-0716-4023-4_6 |
| NEPC patient-derived organoids |
Human |
https://doi.org/10.1002/1878-0261.12662 |
| S1 fraction tumor-dependent spheroids |
Human |
https://doi.org/10.1016/j.xpro.2025.104286 |
| Other |
| Adrenal cells |
Human |
https://doi.org/10.1210/clinem/dgac394 |
| Atheroma-derived single-cell |
Human |
https://doi.org/10.1093/cvr/cvaf014 |
| Bronchoalveolar lavage (BAL) fluid |
Human |
https://doi.org/10.1164/rccm.202310-1831le |
| C2C12 skeletal myoblasts |
Mouse |
https://doi.org/10.1371/journal.pone.0280527 |
| Calvarial osteoblasts |
Mouse |
https://doi.org/10.1073/pnas.0709650104 |
| Dental pulp-derived cells (pDPPCs) |
Porcine |
https://doi.org/10.1111/j.1432-0436.2008.00282.x |
| Fetal astrocytes |
Human |
https://doi.org/10.1007/s44192-023-00050-5 |
| Fetal gonads |
Human |
https://doi.org/10.3390/cells10051214 |
| Flip-In T-REx-293 cells |
Human |
https://doi.org/10.1016/j.cmet.2021.11.001 |
| Hepatocytes |
Mouse |
https://doi.org/10.1016/j.cell.2018.11.012 |
| Hippocampal tissue |
Mouse |
https://doi.org/10.1016/j.neuint.2020.104933 |
| Hu5/KD3 myoblasts |
Human |
https://doi.org/10.1186/s13287-024-03922-x |
| Mitochondrial cardiomyopathy (MCM) heart tissues |
Human |
https://doi.org/10.1126/sciadv.adq1575 |
| Mural granulosa cells (mGCs) |
Human |
https://doi.org/10.1016/j.rbmo.2025.104833 |
| Myometrium cells |
Human |
https://doi.org/10.1371/journal.pone.0338485 |
| Nuclei |
Human |
https://doi.org/10.41588-025-02188-0 |
| Temporomandibular joint (TMJ) discs-derived cells |
Rat |
https://doi.org/10.1016/j.jobcr.2025.03.018 |
| Testicular interstitial cells |
Mouse |
https://doi.org/10.3390/biomedicines10020487 |
| Tumor brain cells |
Mouse |
https://doi.org/10.1016/j.xpro.2023.102049 |
| Tumor spleen cells |
Mouse |
https://doi.org/10.1016/j.xpro.2023.102049 |