Biologists at Purdue University have determined the combined structure of a common-cold virus attached to a molecule that enables the virus to infect its host, information that ultimately may help researchers develop methods for treating certain viral infections.
Coxsackievirus A21 infects host cells first by recognizing a "receptor molecule" called ICAM-1, which is located on the cell's surface, and then by anchoring itself to the molecule. ICAM-1 stands for intracellular adhesion molecule 1.
"ICAM-1 is the same receptor molecule used by the vast majority of viruses that cause the common cold," said Chuan Xiao, a doctoral student who is leading the research in the laboratory of Michael Rossmann, the Hanley Distinguished Professor of Biological Sciences in Purdue's College of Science.
Findings will appear in the July issue of the journal Structure.
"The real objective of this work is to study the whole complex of ICAM-1 and the virus as a single entity," Rossmann said. "Being able to characterize the combined structure of the virus and ICAM-1 will teach us how the virus recognizes a particular kind of molecule and how it then anchors to the cell, which represents the initial stages of infection."
Ultimately, researchers are trying to learn more about the binding mechanisms because such knowledge might eventually lead to new treatments.
"One of the many different ways of inhibiting viral infection is to stop the virus from binding to cells," Rossmann said. "That has not been our objective in this case. We just want to learn how this virus infects its host cell. In other words, how does the virus get into the host?"
Coxsackievirus A21 is one of several viruses that cause the common cold.
The researchers used two methods to learn the structure of the virus-molecule complex. One method, a technique called X-ray crystallography, yielded images of the virus with a resolution of 2.5 angstroms, which is nearly fine enough to see individual atoms. Using this technique, researchers create crystals of a substance, in this case the virus. Then, X-rays are passed through the crystals, creating a "diffraction pattern" that can be interpreted with various computational procedures to produce an image.
The other method, a powerful imaging tool called cryo-electron microscopy, was used to determine the entire three-dimensional structure of the virus-molecule complex. With this technique, specimens are first frozen before they are studied with an electron microscope. Cryo-electron microscopy enables scientists to study details as small as 8 angstroms, resolution high enough to see groups of atoms. An angstrom is one ten-billionth of a meter, or roughly a millionth as wide as a human hair.
"The electron microscopy is necessary for studying the entire complex because you can't crystallize the complex of ICAM-1 and the virus," Rossmann said. "That's because crystallization often takes days, weeks or months, but the complex is only stable for hours, which means it doesn't stay together long enough to crystallize."
The researchers pieced together the overall structure of the virus and ICAM-1 by combining the high-resolution X-ray crystallography images of the virus with the lower resolution electron microscope view.
The findings represent the first time researchers have seen fine details of the complex's structure.
"It's important to see the shape of the complex because that could tell us how the virus recognizes the host cell," Rossmann said. "Knowing the structure might also reveal the initial stages of what happens after attachment, and indeed there probably are different steps in the attachment process.
"The receptor apparently binds into what we call a canyon, which is a surface depression on the virus, and it might do that in at least two different steps. Perhaps it binds once loosely on the surface, and then it might bind again deeply into the canyon to strengthen its attachment."
The research paper was written by Xiao; Carol M. Bator-Kelly, a technical assistant in Rossmann's lab; Elizabeth Rieder, a technical assistant for Eckard Wimmer, a virologist at the State University of New York at Stony Brook; Paul R. Chipman, an electron microscopist at Purdue; Alister Craig, a researcher from the Liverpool School of Tropical Medicine in the United Kingdom; Richard J. Kuhn, a professor of biological sciences at Purdue; Wimmer; and Rossmann.
The images are revealing new details about how amino acids, which are the building blocks of proteins, interact during the binding of Coxsackievirus A21 and ICAM-1.
"In general, some amino acids have a positive charge, and some have a negative charge, and these opposite charges can play a critical role in attracting a virus to a host cell," Rossmann said. "It turns out the attraction between negative and positive charges on the virus and on the host cell seem to be a dominating feature but not the entire story of the recognition process.
"There is also shape involved, and the canyon on the virus and features on the ICAM-1 molecule have to match each other, like a key going into a keyhole."
The research has been funded primarily through a grant from the National Institutes of Health.
Xiao said the research is ongoing, and future work may delve into how Coxsackievirus A21 binds to another cell-receptor molecule called DAF, or decay acceleration factor. The virus binds to both ICAM-1 and DAF at the same time, so future work may result in finding the structure of a complex that includes both molecules attached to the virus.